The Palace Side Hotel
http://www.palacesidehotel.co.jp/english/fr-top-en.html
JPY6,000

Heian Kaikan
http://www.heian-kaikan.com/E/heian_E.html
JPY5,500 (discount rate for >= 4 nights)

Toyoko Inn - Kyoto Shijo-Karasuma
http://www.toyoko-inn.com/e_hotel/00053/index.html
JPY6,720

Toyoko Inn - Kyoto Gojo-Karasuma
http://www.toyoko-inn.com/e_hotel/00040/index.html
JPY6,510

Super Hotel Kyoto Karasuma Gojo
http://www.superhotel.co.jp/en/s_hotels/karasuma.html
JPY6,090

Kyoto Tower Hotel Annex
http://www.kyoto-tower.co.jp/english/annex/index.html
JPY6,500 – 11,000

Kyoto Daini Tower Hotel
http://www.kyoto-tower.co.jp/english/dainitower/index.html
JPY6,500 – 11,500

Hotel Oaks Kyoto Shijo
http://r.hankyu-travel.com/pc/oyadotop.do?command=initialize&facilityCode=00702&languageCode=en
http://r.hankyu-travel.com/pc/oyadodetail.do?command=initialize&facilityCode=00702&languageCode=ja [in Japanese]
JPY5,775

Hotel SanCrane
http://www.sancrane.com/ [in Japanese]
http://www.sancrane.com/access.htm [in Japanese]
JPY6,300

Toyoko Inn - Kyoto Shijoi-Omiya
http://www.toyoko-inn.com/e_hotel/00027/index.html
JPY6,300

APA VILLA HOTEL (KYOTO EKIMAE)
http://web.travel.rakuten.co.jp/portal/my/info_page_e.Eng?f_no=29357
JPY5,500 – 7,700 (depends on date)

KYOTO GION HOTEL
http://web.travel.rakuten.co.jp/portal/my/info_page_e.Eng?f_no=1834
JPY6,300

Hotel Rubino Kyoto Horikawa
http://www.rubino.gr.jp/index.html [in Japanese]
JPY6,300

CO-OP INN KYOTO
http://www.mytrip.net/HOTEL/10846/10846_e.html
JPY7,200